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Cell Signaling and Transcription Factors

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Overview

Monitoring signal transduction in RAW 264.7 cells

 

Cell signaling – the biochemical processes by which cells communicate, transfer, and process information – is vital for proper cellular functioning. Cellular fate and tissue-specific gene expression are regulated by the activity of proteins known as transcription factors that interact with specific DNA sequences to direct the activation or repression of target genes.


Transcription factors can be selectively activated or deactivated by other proteins, often as the final step in signal transduction. Regulation of transcription can occur directly through modification of DNA, post-translation modification of histones, and/or transcription factors. Phosphorylation, acetylation, ubiquitination and other covalent modifications of proteins play an important role in most cellular processes because they can cause rapid changes in the activities of pre-existing proteins. This type of mechanism for regulating protein function is especially crucial in signal transduction pathways and in regulating the cell cycle.


One of the simpler modes of signal transmission from surface receptors to the nucleus is illustrated by proteins that bind to DNA sequences known as cAMP-response elements (CREs), the proteins being called CRE-binding proteins (CREB proteins). A more complex mechanism involving the activation of protein kinase cascades is used to transmit signals from growth-factor receptors to the immediate-early genes that are regulated by transcription factors such as AP-1 (which is a heterodimer of c-jun and c-fos). The major function of these cascades is to activate members of the mitogen-activated protein kinase (MAPK) family of serine/threonine protein kinases, and downstream protein kinases. A third mechanism for transmitting signals from the cell surface to the nucleus – first demonstrated for NFkB – is regulated nuclear translocation of transcription factors that are stored as inactive cytoplasmic complexes. Certain transcription factors such as Smads, act as transcriptional activators or repressors. To learn more about the use of Thermo Scientific high content platforms for cell signaling research check out the Application Areas section.





Application Example

Measuring Intracelullar Signaling

The immune responses elicited after a cell has been exposed to harmful or toxic stimuli include the activation of different intracellular signaling pathways and the release of cytokines. The signaling pathway and severity of the response is both cell-type specific and stimulus-dependent. The traditional approach to examining multiple intracellular targets and subsequent cytokine production requires numerous assays, multiple extract preparations, increased sample size, and a significant amount of time. An alternative, more streamlined approach is to use multiplexed, automated, quantitative cell-based imaging assays (i.e., high-content screening; HCS) to monitor the intracellular inflammatory responses . In this application example, Raw 264.7 macrophages were challenged with bacterial endotoxin (LPS) and interferon gamma to activate signal transduction through the TLR and IFN receptors, yielding robust activation of many target proteins and cytokines. A total of 10 key targets, including p38, ERK, JNK, c-Jun, NF-kB, CREB, PKA, COX-2, iNOS, and MnSOD, were quantitatively measured using the Thermo Scientific Cellomics ArrayScan VTI HCS Reader and corresponding Thermo Scientific Cellomics HCS Reagents The early targets (MAPK, PKA and transcription factors), were measured after 30 minutes of stimulation, while MnSOD, COX-2 and iNOS were measured at the 24-hour time point. All targets were dose-responsive to the LPS/IFN treatment. The results clearly demonstrate both the power of quantitative cell-based imaging systems for studying signal transduction pathways.

 

Figure A

Figure B

Figure C

 

Raw 264.7 cells were stimulated with 500 ng/ml LPS and 100 ng/ml IFN gamma for quantitative image analysis of ten intracellular targets. Early targets (p38, ERK, JNK, PKA, c-Jun, CREB, and NF-kB) were measured after 30 minutes while later targets (MnSOD, COX-2 and iNOS) were measured at 24 hours. (A) Early targets, p38, JNK, ERK, c-Jun, and CREB. (B) Early targets, NF-kB and PKA, and later targets, COX-2, iNOS, and MnSOD. NF-kB has a high background in this cell line, and there is little change after LPS stimulation. However, NF-kB activation may be blocked by pre-treatment with Bay 11-7082 (5 mM) before LPS/IFN challenge. (C) Bar graph, The bar graph represents quantitative data for each target, and is indicated as fold change after normalization to the control (unstimulated). Z’ values are indicated at the top for each target and indicate the robustness of the assay. Error bars represent the standard deviation of each value derived from 16 data points. MnSOD, COX-2 and iNOS were scored using the average cytoplasmic intensity, while the other targets, ERK, p38, c-Jun, NF-kB, CREB, PKA, and JNK were quantitated using the average nuclear intensity or difference between nucleus and cytoplasm.



 

Assays and Reagents
Thermo Scientific Cellomics HCS Reagents and Assays are available for a wide variety of targets. Each assay offers all the components necessary to perform the assay as well as a validated protocol, with step-by-step instructions for use on any of the Thermo Scientific HCS Readers as well as other instrumetation and standard fluorescence microscopes. Reagents and Assays are available in kit form (everything in the box) or as components where based on your need, so you may purchase all or al-la-carte reagents for the assay. To order components for a legacy kit please visit our ReagentFinder page.